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may i ask why you want such an option?

nb. due to jack-session way of doing its thing, which requires every state and media files moved or linked under a designated session folder, which for some reason must be brand new (or empty) to start with, saving a qtractor session as an archive (.qtz) is the only all-inclusive solution for just that.

having the option to not doing that would bring a lot of trouble, like files vanishing without warning or control, specially after you try to save and replace an existing jack-session file set.

cheers