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qjackctl is a pretty old piece of ancient software :) those numbers are just there since ages ago.

and you're correct, N is the number of xrus as detected from scraping the messages log and it only applies to the alsa backend (the most usual perhaps), while M is the number of xruns actually reported through jack api (ie. counts the number of xrun callbacks issue by the jack subsystem).

i guess new users have to live with all these qjackctl idiosyncrasies though.

don'rt worry, be happy :)
byee