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so the problem was that it seems it's ATM not possible to have say a tempo of 4/4 set in qtractor and patterns of length other than 8 in hydrogen... I had a 4/4 tempo in qtractor and patterns of lenght 16 in h2o, and changing the tempo to 8/4 in qtractor seems to solve the issues I was having.

You may be interested in the explanation Wolke gave me of the reasons behind this behaviour - here

cheers
renato