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Thanks for your reply.

I just want to have jack running (for playing music) the way I configured it in qjackctl, without X running.
If I do
export DISPLAY=hostaddr:0.0
I get (not surprisingly):
qjackctl: cannot connect to X server hostaddr:0.0

Maybe it is possible to turn the config file plus patchbay file into a valid jackd command line somehow?
I mean, qjackctl has to pass these commands to jackd somehow?
Then I could just use qjackctl to do the config and only run jackd afterwards.

Somebody suggested this:
http://lalists.stanford.edu/lau/2007/10/0203.html
But I do not quite understand it.