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OK. Got to reproduce the reported behavior with qtractor 0.3.0, released on last years Xmas day :) It seems to be fixed on current CVS and that's the reason I was not having the same behavior as yours.

Can't really tell at this time why it is fixed already, 'coz current CVS has been under a major and internal overhaul with regard to tempo and time-signature measures, with obvious implications to transport syncronization. All this to introduce tempo/time-signature support in a near future.

It would be of great help if you could test the current CVS version as well, but remember to keep the stable (but broken) near by as backup, just in case :)

Re. the recent segfault looks intriguing though.

gdb qtractor core 
...
Core was generated by `qtractor'.
Program terminated with signal 11, Segmentation fault.
(gdb) bt
#0  0xb807fdd8 in jack_port_get_buffer () from /usr/lib/libjack.so.0
#1  0x08076ee7 in ?? ()
#2  0x0807b5b3 in ?? ()
...

What steps, if any, can be taken to repeat this one?
Byee