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looks like you were right. Deleting $HOME/.config/rncbc.org/QjackCtl.conf did the trick. All i had to do was specify set_rlimits and jackd without any path indication (as it was already in my $PATH) and that did the trick. Now all i have to do is figure out why jack will not restart sometimes when i have to stop it so another application (that is not readily compatible with jack) can use the sound system. If you have any suggestions on this please let me know.