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Thanks, I found that the "Keep tool windows always on top" option was already ticked on, but I'm still on the same condition. I tried on the regular Qtractor I have installed (0.4.6) and I realized that it had the same behaviour, I think there must something with my desktop manager (Gnome) because I tried Qtractor in IceWM and worked fine.

Some times things get fixed magically, sometimes they break (tragically). I'll do some searching and try to solve this thing.

Sorry for blaming on you!
see you